PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS57157.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family M-type_MADS
Protein Properties Length: 184aa    MW: 20964.1 Da    PI: 9.5452
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS57157.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.86.6e-141148340
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                i++++ r  tf kR++g++KK +EL vLC+++v+ +i+
  EPS57157.1 11 ISDDRTRRETFKKRKKGLFKKLNELKVLCNIDVCGVII 48
                89999999**************************6665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.2E-14161IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.61151IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-7323IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-19391IPR002100Transcription factor, MADS-box
PfamPF003193.0E-151151IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-72338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MARSRIKYEL ISDDRTRRET FKKRKKGLFK KLNELKVLCN IDVCGVIIDD TRGQQPEVWP  60
SHHDATRVIQ RFDELPSSSK SVNMLDQTRY LRLNVARINS NLEKESSKVR SWEKELFLGR  120
CLMDDGAVKA AATDDDDDAA FGLEEMLRLV EMKIVLVDRR IAEIGIPSTS TAKQRDGKGK  180
APLG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11425RTRRETFKKRKK
21631RRETFKKRKKGLFKKL
32125KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLS8DCS11e-132S8DCS1_9LAMI; Uncharacterized protein
STRINGMigut.C01325.1.p5e-59(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA858166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-14AGAMOUS-like 80
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]