PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS57173.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family C3H
Protein Properties Length: 170aa    MW: 20144.1 Da    PI: 11.0638
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS57173.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.76.3e-064467226
                -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                +++ Cr + +   C++G+ C+F+H 
  EPS57173.1 44 REATCRQYEE-DSCNRGGYCNFMHL 67
                6789**9999.*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.70.3302.0E-9139IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF549281.36E-9243IPR012677Nucleotide-binding alpha-beta plait domain
PRINTSPR018483.1E-162448IPR009145U2 auxiliary factor small subunit
PROSITE profilePS5010310.3334269IPR000571Zinc finger, CCCH-type
PRINTSPR018483.1E-165971IPR009145U2 auxiliary factor small subunit
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000398Biological ProcessmRNA splicing, via spliceosome
GO:0089701Cellular ComponentU2AF
GO:0000166Molecular Functionnucleotide binding
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
HQVGNVYVQF REEEHAANAL KNLTGRFYAG RPIIVDFSPV TDFREATCRQ YEEDSCNRGG  60
YCNFMHLKRI GRELRRQLFG KQRRRHSRSR SPQRHRSYED RSSHGSRGHS RKYDDGGDYH  120
ESRGRRHRSS SPGHRRGGRR PPPRSPAREG SEERRAKIEQ WNKEREEAEK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yh8_A2e-26184102185Splicing factor U2AF 23 kDa subunit
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtNecessary for the splicing of pre-mRNA. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007015960.14e-82PREDICTED: splicing factor U2af small subunit B
RefseqXP_017983739.14e-82PREDICTED: splicing factor U2af small subunit B
SwissprotQ9ZQW82e-52U2AFA_ORYSJ; Splicing factor U2af small subunit A
TrEMBLS8D3A21e-119S8D3A2_9LAMI; Uncharacterized protein (Fragment)
STRINGEOY335791e-81(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA106155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10320.11e-10C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  3. Domon C,Lorković ZJ,Valcárcel J,Filipowicz W
    Multiple forms of the U2 small nuclear ribonucleoprotein auxiliary factor U2AF subunits expressed in higher plants.
    J. Biol. Chem., 1998. 273(51): p. 34603-10
    [PMID:9852132]