PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS57274.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

NF-YA

Protein Properties

Length: 100aa MW: 10960.3 Da PI: 11.2046

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS57274.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	109.2	3.2e-34	17	73	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p+YVNaKQy++Il+RRq+Rakle+++kl k+rkpylheSRh+hAl+R Rg+gGrF EPS57274.1 17 DGPIYVNAKQYHGILRRRQTRAKLEAQNKL-VKTRKPYLHESRHQHALNRVRGTGGRF 73 57**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	6.6E-37	15	76	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.477	16	76	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	3.9E-29	19	73	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	5.3E-25	19	41	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	21	41	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	5.3E-25	50	73	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010262	Biological Process	somatic embryogenesis
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 100 aa Download sequence Send to blast
QMMGGGRVPL PADVPDDGPI YVNAKQYHGI LRRRQTRAKL EAQNKLVKTR KPYLHESRHQ 60 HALNRVRGTG GRFLSTKKQQ KEEASSSAPP PGGGSSSSDS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	2e-23	17	79	2	64	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020553567.1	2e-46	nuclear transcription factor Y subunit A-3 isoform X1
Refseq	XP_020553568.1	2e-46	nuclear transcription factor Y subunit A-3 isoform X1
Refseq	XP_020553569.1	2e-46	nuclear transcription factor Y subunit A-3 isoform X1
Refseq	XP_020553570.1	2e-46	nuclear transcription factor Y subunit A-3 isoform X2
Refseq	XP_020553571.1	2e-46	nuclear transcription factor Y subunit A-3 isoform X3
Refseq	XP_020553572.1	2e-46	nuclear transcription factor Y subunit A-3 isoform X5
Refseq	XP_020553573.1	2e-46	nuclear transcription factor Y subunit A-3 isoform X5
Swissprot	Q9LVJ7	3e-36	NFYA6_ARATH; Nuclear transcription factor Y subunit A-6
TrEMBL	S8BS70	7e-67	S8BS70_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.J00955.1.p	3e-45	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5009	23	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14020.1	3e-36	nuclear factor Y, subunit A6

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]