PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS57303.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family LBD
Protein Properties Length: 95aa    MW: 11090.8 Da    PI: 9.5443
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS57303.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260103.91.4e-32192191
      DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlk 91
                aCa+Ck++r+kC+++C+lap+fp  ++++f++vhk+FG+snv+k+++ l++e+ r+ a++sl++eA ++ rdPv G +g ++++ ++++  k
  EPS57303.1  1 ACASCKHQRKKCTENCALAPHFPVGKSREFRAVHKIFGVSNVTKMVTGLQREDdRKSAVESLTWEALCWGRDPVWGPYGAYRRVWEEMRMYK 92
                7************************************************88877*************************9999888777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031952.0E-30190IPR004883Lateral organ boundaries, LOB
PROSITE profilePS5089121.969195IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
ACASCKHQRK KCTENCALAP HFPVGKSREF RAVHKIFGVS NVTKMVTGLQ REDDRKSAVE  60
SLTWEALCWG RDPVWGPYGA YRRVWEEMRM YKSYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-182881297LOB family transfactor Ramosa2.1
5ly0_B3e-182881297LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00128DAPTransfer from AT1G06280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009619412.11e-45PREDICTED: LOB domain-containing protein 2
SwissprotQ9LNB96e-36LBD2_ARATH; LOB domain-containing protein 2
TrEMBLS8D3L37e-66S8D3L3_9LAMI; Uncharacterized protein (Fragment)
STRINGXP_009619412.15e-45(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA101771827
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.13e-38LOB domain-containing protein 2
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]