PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS57419.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

Dof

Protein Properties

Length: 70aa MW: 8022.74 Da PI: 4.5882

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS57419.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	43.7	5.8e-14	45	70	2	27
zf-Dof 2 kekalkcprCdstntkfCyynnysls 27 ++k+l+cprCdst+tkfCyynny+++ EPS57419.1 45 PDKILRCPRCDSTDTKFCYYNNYNIN 70 7899********************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-8	42	70	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.9E-10	47	69	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 70 aa Download sequence Send to blast
ELNRSSITEA EEPQNDNKAP ESSDCDETSK GRDSTNGEKK LLMKPDKILR CPRCDSTDTK 60 FCYYNNYNIN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011087240.1	3e-14	cyclic dof factor 1
Swissprot	Q9LQX4	4e-11	DOF13_ARATH; Dof zinc finger protein DOF1.3
TrEMBL	S8BSR7	2e-43	S8BSR7_9LAMI; Uncharacterized protein (Fragment)
STRING	AC155434.2_FGP006	2e-13	(Zea mays)
STRING	GRMZM6G787651_P01	2e-13	(Zea mays)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26790.1	2e-13	Dof family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]