PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS57454.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family HD-ZIP
Protein Properties Length: 199aa    MW: 22386.8 Da    PI: 6.2555
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS57454.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.88.7e-192073356
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                k+++++ eq+++Le+ Fe  +++ ae++ +LA+ lgL+ rqV +WFqNrRa++k
  EPS57454.1 20 KKRRLNMEQVRTLEKNFELGNKLEAERKMQLARDLGLQPRQVAIWFQNRRARWK 73
                456899***********************************************9 PP
2HD-ZIP_I/II125.13.2e-4019109191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  ekkrrl+ eqv++LE++Fe  +kLe erK++lar+Lglqprqva+WFqnrRAR+ktkqlEkdy+ Lkr++++ k+en++L +++++L++e+
   EPS57454.1  19 EKKRRLNMEQVRTLEKNFELGNKLEAERKMQLARDLGLQPRQVAIWFQNRRARWKTKQLEKDYDLLKRQFEEAKAENDALLAQNQKLHAEI 109
                  69**************************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.4E-19576IPR009057Homeodomain-like
SuperFamilySSF466899.8E-201377IPR009057Homeodomain-like
PROSITE profilePS5007117.4591575IPR001356Homeobox domain
SMARTSM003891.6E-171879IPR001356Homeobox domain
PfamPF000463.5E-162073IPR001356Homeobox domain
CDDcd000864.98E-162076No hitNo description
PRINTSPR000314.8E-64655IPR000047Helix-turn-helix motif
PROSITE patternPS0002705073IPR017970Homeobox, conserved site
PRINTSPR000314.8E-65571IPR000047Helix-turn-helix motif
PfamPF021836.3E-1375116IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0048826Biological Processcotyledon morphogenesis
GO:0080022Biological Processprimary root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
GGGHGGEDEL SDDGSQGGEK KRRLNMEQVR TLEKNFELGN KLEAERKMQL ARDLGLQPRQ  60
VAIWFQNRRA RWKTKQLEKD YDLLKRQFEE AKAENDALLA QNQKLHAEIL ALKNMESINL  120
NKGTNDGGSS SDNTPGEKIK LEIDSSSPSN SKHNAIAQHY SKTEISPVKE ESAFCNIFCG  180
VDDHATAPGG FWPWIEQQH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16775RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00225DAPTransfer from AT1G69780Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002276889.12e-82PREDICTED: homeobox-leucine zipper protein ATHB-13
SwissprotQ8LC031e-75ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBLS8BSU11e-145S8BSU1_9LAMI; Uncharacterized protein (Fragment)
STRINGVIT_01s0026g01950.t017e-82(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8482498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.15e-78HD-ZIP family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  4. Wang X, et al.
    Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.
    Sci China Life Sci, 2018. 61(1): p. 79-87
    [PMID:28887625]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]