PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS57494.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family CPP
Protein Properties Length: 163aa    MW: 18204.8 Da    PI: 8.1355
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS57494.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR53.64.5e-171552340
         TCR  3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40
                +k+CnCkkskClk+YC+Cfaag++C + C C dC+Nk 
  EPS57494.1 15 CKRCNCKKSKCLKLYCDCFAAGVYCMDLCACVDCFNKP 52
                89**********************************96 PP
2TCR543.3e-17100138139
         TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                 ++k+gCnCkks ClkkYCeC++ g+ Cs +C+Ce+CkN 
  EPS57494.1 100 RHKRGCNCKKSGCLKKYCECYQVGVGCSLNCRCEGCKNA 138
                 589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011148.3E-171354IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.90214140IPR005172CRC domain
PfamPF036389.5E-131651IPR005172CRC domain
SMARTSM011141.1E-17100141IPR033467Tesmin/TSO1-like CXC domain
PfamPF036388.7E-13102138IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
RRRRGEQMTG DGEGCKRCNC KKSKCLKLYC DCFAAGVYCM DLCACVDCFN KPVHEDTVLA  60
TRKQIESRNP LAFAPKVIRG SDHRQLEIGV DFTKTPASAR HKRGCNCKKS GCLKKYCECY  120
QVGVGCSLNC RCEGCKNAFG RKDGPNPKAD LEDDDEAEEE EKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-211613712120Protein lin-54 homolog
5fd3_B3e-211613712120Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011073448.17e-81protein tesmin/TSO1-like CXC 2 isoform X1
RefseqXP_011073452.14e-81protein tesmin/TSO1-like CXC 2 isoform X4
RefseqXP_020547912.12e-81protein tesmin/TSO1-like CXC 2 isoform X5
SwissprotF4JIF58e-78TCX2_ARATH; Protein tesmin/TSO1-like CXC 2
TrEMBLS8BSX31e-114S8BSX3_9LAMI; Uncharacterized protein (Fragment)
STRINGXP_006406130.15e-81(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA69802128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-79TESMIN/TSO1-like CXC 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]