PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS57585.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family bHLH
Protein Properties Length: 157aa    MW: 17239 Da    PI: 8.5007
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS57585.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.95.5e-11952354
                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                 +h+e+ErrRR+riN  +++L+++lP+         +Ka+ L +Av+ +++L
  EPS57585.1  9 NSHKEAERRRRKRINAHISTLKSILPNT--------DKASLLGEAVRRVREL 52
                68*************************7........6888888888877766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.693652IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-8952IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-11965IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-111054IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-81258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550214.12E-591155No hitNo description
Gene3DG3DSA:3.30.70.2602.4E-592154No hitNo description
CDDcd048730.0063192153No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
ESKAFAASNS HKEAERRRRK RINAHISTLK SILPNTDKAS LLGEAVRRVR ELNKAAAELL  60
DDETPLKVLF PSEADEVKVS PVEEEEGLVK ATMCCEDRPE MVVDLIKALK SVEAKVVKAE  120
MSTMGGRTKS VLWVQLNVGC ESDVGLATLR RALKGVV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011097486.25e-60transcription factor bHLH30-like
SwissprotQ9S7Y12e-30BH030_ARATH; Transcription factor bHLH30
TrEMBLS8BSM21e-107S8BSM2_9LAMI; Uncharacterized protein (Fragment)
STRINGXP_009605433.12e-49(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72832231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.13e-33bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  3. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  4. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]