PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS57629.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

WRKY

Protein Properties

Length: 116aa MW: 13452.1 Da PI: 8.2362

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS57629.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	62.1	9.9e-20	1	38	22	59
EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 22 rsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 rsYYrCt+++Cpvkk+vers +dp++v++tYeg+Hnh+ EPS57629.1 1 RSYYRCTTPKCPVKKRVERSFQDPSIVITTYEGQHNHQ 38 9************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50811	19.393	1	40	IPR003657	WRKY domain
SuperFamily	SSF118290	2.35E-15	1	40	IPR003657	WRKY domain
Pfam	PF03106	1.3E-13	1	38	IPR003657	WRKY domain
SMART	SM00774	4.3E-11	1	39	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	9.5E-18	1	40	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 116 aa Download sequence Send to blast
RSYYRCTTPK CPVKKRVERS FQDPSIVITT YEGQHNHQVP ATLRGSIAGL FAPPMMIPSL 60 QLENSTVHRD LLHLYGYDSA AEFYRQRSFH PAQQQHQKHD ESTQYSDYGL LQDMIP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-14	1	41	38	78	Probable WRKY transcription factor 4
2lex_A	1e-14	1	41	38	78	Probable WRKY transcription factor 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022898810.1	6e-36	probable WRKY transcription factor 28
TrEMBL	S8BTA2	8e-82	S8BTA2_9LAMI; Uncharacterized protein (Fragment)
STRING	EOY27787	1e-31	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1485	24	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29860.1	5e-26	WRKY DNA-binding protein 71

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]