PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS57715.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family DBB
Protein Properties Length: 190aa    MW: 20495.2 Da    PI: 6.1358
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS57715.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.35e-06447542
    zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                 C+ +e   ++  C  ++  lC  C ++ H        H++vpl
  EPS57715.1  4 QCNVCEATVATVLCCADEAALCSGCDQKVHAAnklagkHQRVPL 47
                7******99*********************66899999999986 PP
2zf-B_box31.34.1e-105294137
    zf-B_box  1 seerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                s+++kC+ ++e    +fC +++ llC++C l++H+       H
  EPS57715.1 52 SQMPKCDICQETVGYFFCLEDRALLCRKCDLAIHSVnplvstH 94
                689*********9*********************435555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.911147IPR000315B-box-type zinc finger
CDDcd000211.12E-5347No hitNo description
SMARTSM003363.0E-7447IPR000315B-box-type zinc finger
SuperFamilySSF578457.32E-54586No hitNo description
PROSITE profilePS501199.2865299IPR000315B-box-type zinc finger
SMARTSM003369.2E-175299IPR000315B-box-type zinc finger
PfamPF006435.6E-85395IPR000315B-box-type zinc finger
CDDcd000211.66E-85599No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MKIQCNVCEA TVATVLCCAD EAALCSGCDQ KVHAANKLAG KHQRVPLSSS SSQMPKCDIC  60
QETVGYFFCL EDRALLCRKC DLAIHSVNPL VSTHQRFLLT GVKVGTEAVE HAPPEKISEH  120
TSRSTPKNAG NTTPAAAAVP AMAHFESRGD FLSSKLPTYE GGGSETISQW QLDEFLGLGD  180
YNNQSLNFMD
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011098187.14e-80B-box zinc finger protein 22
SwissprotQ9SYM27e-69BBX22_ARATH; B-box zinc finger protein 22
TrEMBLS8BSY11e-140S8BSY1_9LAMI; Uncharacterized protein (Fragment)
STRINGPGSC0003DMT4000489646e-75(Solanum tuberosum)
STRINGXP_010060760.15e-75(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28922346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.13e-68light-regulated zinc finger protein 1
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]