PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS57743.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

LBD

Protein Properties

Length: 116aa MW: 12192.2 Da PI: 8.3884

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS57743.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	93.2	2.9e-29	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C+vlr++C ++Cvl+p++ +++q +++ +v k+FG++ ++++++a+pe++r ++++sl++eA r+ +Pv+Gavg+++++++ ++++++e+ EPS57743.1 2 SCNGCRVLRKGCGESCVLRPCLqtietAEAQGHATVFVSKFFGRAGLMSFISAVPESKRAAVFQSLLFEAAGRTINPVNGAVGLLWTGNWPVCEAAVET 100 6*******************8888666788**************************************************************998 PP DUF260 95 all 97 +l+ EPS57743.1 101 VLR 103 876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.796	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.0E-25	2	101	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006807	Biological Process	nitrogen compound metabolic process
GO:0060776	Biological Process	simple leaf morphogenesis

Sequence ? help Back to Top
Protein Sequence Length: 116 aa Download sequence Send to blast
MSCNGCRVLR KGCGESCVLR PCLQTIETAE AQGHATVFVS KFFGRAGLMS FISAVPESKR 60 AAVFQSLLFE AAGRTINPVN GAVGLLWTGN WPVCEAAVET VLRGGALKPI PPELAG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011099355.1	9e-68	LOB domain-containing protein 37-like
Swissprot	Q9FN11	2e-65	LBD37_ARATH; LOB domain-containing protein 37
TrEMBL	S8D4X6	6e-78	S8D4X6_9LAMI; Uncharacterized protein (Fragment)
STRING	XP_009801229.1	2e-66	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA966	24	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	7e-68	LOB domain-containing protein 37

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]