PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS57803.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family HD-ZIP
Protein Properties Length: 108aa    MW: 12808.8 Da    PI: 10.5148
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS57803.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.97.1e-181972356
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                k++++++eq++ Le++Fe ++++   ++ ++A+++gL+ rqV +WFqNrRa+ k
  EPS57803.1 19 KKRRLKSEQVKLLEKVFEVENKLVPCRKLQIAREIGLNPRQVAIWFQNRRARSK 72
                56689***********************************************99 PP
2HD-ZIP_I/II116.51.6e-3718107190
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                  ekkrrl++eqvklLE+ Fe e+kL p rK ++are+gl+prqva+WFqnrRAR k+k lEk+++aLk++yd lk+e +++ ke+++Lre+
   EPS57803.1  18 EKKRRLKSEQVKLLEKVFEVENKLVPCRKLQIAREIGLNPRQVAIWFQNRRARSKSKVLEKEFDALKSKYDDLKSEYDAVLKENQKLREA 107
                  69*************************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.39E-181173IPR009057Homeodomain-like
PROSITE profilePS5007116.181474IPR001356Homeobox domain
SMARTSM003897.6E-151778IPR001356Homeobox domain
CDDcd000861.26E-101974No hitNo description
PfamPF000463.1E-151972IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.0E-182081IPR009057Homeodomain-like
PRINTSPR000318.1E-64554IPR000047Helix-turn-helix motif
PROSITE patternPS0002704972IPR017970Homeobox, conserved site
PRINTSPR000318.1E-65470IPR000047Helix-turn-helix motif
PfamPF021834.7E-1174106IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    Send to blast
EKRISENRDG NGSCHRPEKK RRLKSEQVKL LEKVFEVENK LVPCRKLQIA REIGLNPRQV  60
AIWFQNRRAR SKSKVLEKEF DALKSKYDDL KSEYDAVLKE NQKLREAV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11823KKRRLK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012855432.14e-38PREDICTED: homeobox-leucine zipper protein ATHB-54-like
SwissprotQ022839e-35HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLS8D5151e-70S8D515_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.E00117.1.p1e-37(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8252495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.14e-37homeobox 1
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]