PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS57853.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family bHLH
Protein Properties Length: 219aa    MW: 24172.7 Da    PI: 6.6318
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS57853.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.46.3e-144392255
                HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                r +h+  E+rRR++iN++++ Lr l+P++    ++K + a+ L ++++Y++ Lq
  EPS57853.1 43 RSKHSVTEQRRRSKINERYQILRGLIPNS----DQKRDTASFLLEVIHYVQFLQ 92
                889*************************9....8*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.58E-1839113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.8E-2140112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.4784191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.51E-144396No hitNo description
PfamPF000102.8E-114392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-104797IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MQAGKHHQGE EEDEDEEFGA RKDANRSKGF SDGKNDDKAN AMRSKHSVTE QRRRSKINER  60
YQILRGLIPN SDQKRDTASF LLEVIHYVQF LQEKVQKYEG SYQTWNSEPI KLMPWATGIP  120
LQQPNSTTPA ADDGAAFSHM LLQGGQPPPN ECSGGGACPA PTNNHRDEPA IEGGTISISS  180
VYSQGLLNSL TQALQTTGLD LSQSTISVQI NLGKRVHRN
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012847749.13e-80PREDICTED: transcription factor BIM2
SwissprotQ9CAA46e-63BIM2_ARATH; Transcription factor BIM2
TrEMBLS8D5F71e-163S8D5F7_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.L01158.1.p1e-79(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44262337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.11e-62BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]