PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS57876.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family MIKC_MADS
Protein Properties Length: 143aa    MW: 16253.7 Da    PI: 9.9599
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS57876.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF71.95.3e-231059251
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                +ie+k  rqvtfskRr+g++KKA+ LS+LC+a+v  ii+s +gkl+ +s+
  EPS57876.1 10 PIEDKNARQVTFSKRRKGLFKKAKMLSILCGADVGAIIISCRGKLHQFST 59
                69**********************************************96 PP
2K-box16.43.6e-071151404570
       K-box  45 sLslkeLqqLeqqLekslkkiRskKn 70 
                 s s+ +L  Le+qLe +l +iR+ K 
  EPS57876.1 115 SHSVTDLAVLEKQLEVALIQIREAKV 140
                 56899******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006626.745161IPR002100Transcription factor, MADS-box
SMARTSM004323.2E-30160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-25276IPR002100Transcription factor, MADS-box
CDDcd002651.33E-31276No hitNo description
PRINTSPR004045.5E-20323IPR002100Transcription factor, MADS-box
PfamPF003194.9E-231157IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-202338IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-203859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MGRRRLEIRP IEDKNARQVT FSKRRKGLFK KAKMLSILCG ADVGAIIISC RGKLHQFSTS  60
NSLPRTLRRY YNYAESESGT SDGPPSEEQL SKDSEYITKE ELLRIIHRGI DEPNSHSVTD  120
LAVLEKQLEV ALIQIREAKV IVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A7e-14175174MEF2 CHIMERA
6byy_B7e-14175174MEF2 CHIMERA
6byy_C7e-14175174MEF2 CHIMERA
6byy_D7e-14175174MEF2 CHIMERA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
129RRRLEIRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009625850.12e-42PREDICTED: agamous-like MADS-box protein AGL27
TrEMBLS8C0F51e-100S8C0F5_9LAMI; Uncharacterized protein (Fragment)
STRINGXP_009625850.17e-42(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65080.12e-29MIKC_MADS family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]