PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS57880.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family ERF
Protein Properties Length: 149aa    MW: 16734.5 Da    PI: 8.0826
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS57880.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.82.7e-18756255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                +y+GVr+++ +g+Wv+eIr+p     +  +r++lg+f tae+Aa+ +++a++ + g
  EPS57880.1  7 RYRGVRQRH-WGSWVSEIRHP-----QlkTRIWLGTFETAEDAARVYDEAARIMCG 56
                69******9.**********9.....445**********************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.66E-33665No hitNo description
Gene3DG3DSA:3.30.730.101.3E-33765IPR001471AP2/ERF domain
PROSITE profilePS5103220.639764IPR001471AP2/ERF domain
SMARTSM003806.1E-39770IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-20765IPR016177DNA-binding domain
PfamPF008471.6E-10756IPR001471AP2/ERF domain
PRINTSPR003679.1E-11819IPR001471AP2/ERF domain
PRINTSPR003679.1E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MTRPQQRYRG VRQRHWGSWV SEIRHPQLKT RIWLGTFETA EDAARVYDEA ARIMCGAKAR  60
TNFPNESPSG NNLISASLMA KLQKCHLASL KLAQEQQSRA GEASKTRSQD NGGSNSNQGS  120
NPNRCDDDDE IEQMIQELLH YGSIELSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-17670469ATERF1
3gcc_A2e-17670469ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00526DAPTransfer from AT5G25190Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017251328.14e-63PREDICTED: ethylene-responsive transcription factor ERF003
SwissprotQ94AW53e-56ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLS8BTJ51e-108S8BTJ5_9LAMI; Uncharacterized protein (Fragment)
STRINGLus100168153e-58(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13622476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.17e-54ERF family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]