PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS57889.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family GATA
Protein Properties Length: 276aa    MW: 29646.1 Da    PI: 7.1039
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS57889.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.11.4e-19195229135
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 Cs+Cg+tkTp+WR gp g+ktLCnaCG+++++ +l
  EPS57889.1 195 CSHCGVTKTPQWRAGPMGSKTLCNACGVRFKSGRL 229
                 *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.3E-731269IPR016679Transcription factor, GATA, plant
SuperFamilySSF577161.28E-15187251No hitNo description
PROSITE profilePS5011412.123189225IPR000679Zinc finger, GATA-type
SMARTSM004012.5E-17189243IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.1E-15193227IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.57E-16194243No hitNo description
PROSITE patternPS003440195220IPR000679Zinc finger, GATA-type
PfamPF003202.4E-17195229IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
DDLFVDELLD FSSHEFSDGE GEEEMGEGKR ENGRDDSSRV LGEPEDGGVL GGLPESPFAA  60
AAAGLESLEW LSHFVEESFS DFSLAGKLTS DAAEEKIPAP GKAWFGGPQV QTKARSKRAR  120
IGIRVWPVLS TDSTATSSSS SSSSSTTTAT ATAFDSLTPN AVQSRVPLLV GKKRMKKRKE  180
SEHSGAVAAG QPRRCSHCGV TKTPQWRAGP MGSKTLCNAC GVRFKSGRLL PEYRPACSPT  240
FSVELHSNSH RKVMEMRRKK ESEMELAGAP PPVPSF
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100952.12e-86GATA transcription factor 5-like
SwissprotQ9FH575e-61GATA5_ARATH; GATA transcription factor 5
TrEMBLS8BU660.0S8BU66_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.L00033.1.p4e-78(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11542481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.28e-51GATA transcription factor 5
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]