PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS58012.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family C2H2
Protein Properties Length: 297aa    MW: 32102.6 Da    PI: 9.5729
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS58012.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.17.4e-063052123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C++C+k F r  nL+ H r H
  EPS58012.1 30 FVCEICNKGFQRDQNLQLHRRGH 52
                89*******************88 PP
2zf-C2H221.27.7e-07106128123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ykC+ C+k +  +s+Lk H++t+
  EPS58012.1 106 YKCERCSKKYAVQSDLKAHMKTC 128
                 9********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.6E-62952IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.12E-82952No hitNo description
PfamPF121714.2E-53052IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9493052IPR007087Zinc finger, C2H2
SMARTSM003550.0173052IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803252IPR007087Zinc finger, C2H2
SMARTSM0035522071101IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.4E-694127IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.12E-8101127No hitNo description
PROSITE profilePS501579.66106134IPR007087Zinc finger, C2H2
SMARTSM0035519106126IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
KRKRNLPGMP DPDAEVIALS PKALLATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLRQ  60
RSSKEVRKRV YVCPESTCVH HDPARALGDL TGIKKHFCRK HGDKKYKCER CSKKYAVQSD  120
LKAHMKTCGT REYRCDCGTL FSRRDSFITH RSFCDALAQE TARSHPPPIP PLAAASCSPP  180
PPPLSPTTDA LSPVLSVQSS AFDLPAAAEL PENLQSPAVL LPSTASAATV SSSSSTTSGG  240
TIANHCGAFS GIFSSSASEL TQSSHPHPPP PPPHYIQTSP PALSATALLA TTTPVSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-33102163364Zinc finger protein JACKDAW
5b3h_F3e-33102163364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016687546.11e-122PREDICTED: protein indeterminate-domain 2-like
SwissprotQ9LVQ71e-115IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLS8DF460.0S8DF46_9LAMI; Uncharacterized protein (Fragment)
STRINGEOY147121e-120(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-111C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  3. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]