PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS58076.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family TCP
Protein Properties Length: 402aa    MW: 43920.8 Da    PI: 6.8434
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS58076.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP108.69.4e-34251472115
         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.........ka 90 
                 +g+kdrhsk++T++g+RdRRvRl a++a++f+d+qd+LG+d++sk+++WL+++ak ai+el++++  ++++c ++++s+   ++++ +         + 
  EPS58076.1  25 TGRKDRHSKVCTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKNAIDELAELPHWHPTSCsDHHNSVGGFEHHHDDvekeleeerR- 122
                 79**************************************************************7777777743333333333333336666666532. PP

         TCP  91 aksaakskksqksaasalnlakesr 115
                 + + a s +sq++++s+l ++ +s 
  EPS58076.1 123 QLEMAISPRSQQQNSSFLPPSLHSD 147
                 2222233333333333344333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.4E-3025213IPR005333Transcription factor, TCP
PROSITE profilePS5136932.9792785IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
SSRFGPRSSC GEIVEVQGGH IVRSTGRKDR HSKVCTAKGP RDRRVRLAAH TAIQFYDVQD  60
RLGYDRPSKA VDWLIKKAKN AIDELAELPH WHPTSCSDHH NSVGGFEHHH DDVEKELEEE  120
RRQLEMAISP RSQQQNSSFL PPSLHSDSIA DTIKSFFPMG GASAESSSSG VQQQFQNFPN  180
QDLRLSLQSF QDPMLLHHHN RQQQQQQQQQ QNISEQPQGH HHVQAQVLLS GTPLGFDGSW  240
AAAEQQQHQH AAAEYCRLQR LAGWNPGGSG GGDNVNNSNN NSGSGGGAGF LFDSSPHLLG  300
HTQFSLQRGP LQSSNTPSVR AWMDPSGGGV GIASAETSHH HQQQHHLLPT IYASSMQGIG  360
FGSGGGVGSF SGFHIPARIQ GDEEEHDGYS EKPSPASSDS RH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-203285154Putative transcription factor PCF6
5zkt_B2e-203285154Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00009PBMTransfer from 929286Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011082737.11e-153transcription factor TCP4-like
RefseqXP_011082738.11e-153transcription factor TCP4-like
TrEMBLS8C0V10.0S8C0V1_9LAMI; Uncharacterized protein (Fragment)
STRINGXP_009785152.11e-123(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32072349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.32e-70TCP family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]