PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS58077.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

HB-other

Protein Properties

Length: 215aa MW: 24775.8 Da PI: 8.3267

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS58077.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.9	5.3e-21	97	152	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q++e+e+lF+++++p+ ++r +L++ lgL+ rqVk+WFqNrR+++k EPS58077.1 97 KKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSQDLGLKPRQVKFWFQNRRTQMK 152 688999***********************************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	9.19E-21	78	155	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.2E-23	78	152	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.973	94	154	IPR001356	Homeobox domain
SMART	SM00389	2.3E-18	95	158	IPR001356	Homeobox domain
Pfam	PF00046	1.5E-18	97	152	IPR001356	Homeobox domain
CDD	cd00086	1.62E-16	97	155	No hit	No description
PROSITE pattern	PS00027	0	129	152	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
RRKKMYGDCQ VLSTMGNNGI PIHSDNSLYT STLQNPNFSF MANINPFNIF SPIIPKEENG 60 MGKNKDEILE SGSGSEHIDG VSGNEQETDQ QQPPNKKKRY HRHTARQIQE MEALFKECPH 120 PDDKQRLKLS QDLGLKPRQV KFWFQNRRTQ MKAQQDRQDN VVLRAENENL KNENYRLQAT 180 LRSIACPNCG GPGMIGEMGF DEQQLRIENA RLKEE

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011070329.1	1e-120	homeobox-leucine zipper protein HDG5 isoform X2
Swissprot	A2ZAI7	6e-77	ROC3_ORYSI; Homeobox-leucine zipper protein ROC3
TrEMBL	S8DFA8	1e-160	S8DFA8_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.E00753.1.p	1e-111	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9020	22	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46880.1	1e-61	homeobox-7

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]