PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS58259.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

HD-ZIP

Protein Properties

Length: 137aa MW: 15607.8 Da PI: 9.3553

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS58259.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.4	2.5e-18	23	77	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k EPS58259.1 23 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 77 788899***********************************************98 PP
2	HD-ZIP_I/II	131.7	2.8e-42	23	113	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++dal+een+rL+ke ++Lr +lk EPS58259.1 23 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCDALTEENRRLQKELHDLR-ALK 113 69*************************************************************************************9.555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.2E-18	12	78	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.34E-19	17	80	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.135	19	79	IPR001356	Homeobox domain
SMART	SM00389	1.3E-15	21	83	IPR001356	Homeobox domain
CDD	cd00086	6.00E-14	23	80	No hit	No description
Pfam	PF00046	8.2E-16	23	77	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	54	77	IPR017970	Homeobox, conserved site
SMART	SM00340	1.5E-24	79	122	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	7.0E-12	79	113	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 137 aa Download sequence Send to blast
GGGGGGGAAE RISDDDENGV NTRKKLRLSK EQSAFLEESF KEHNTLNPKQ KLALAKQLNL 60 RPRQVEVWFQ NRRARTKLKQ TEVDCEYLKR CCDALTEENR RLQKELHDLR ALKTSAPFYM 120 QIPATTLTMC PSCEKIA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	21	27	TRKKLRL
2	71	79	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015066232.1	9e-80	homeobox-leucine zipper protein HOX11-like
Refseq	XP_015969427.1	6e-81	homeobox-leucine zipper protein HOX11
Swissprot	P46665	8e-75	HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBL	S8BV53	4e-97	S8BV53_9LAMI; Uncharacterized protein (Fragment)
STRING	POPTR_0016s05890.1	3e-78	(Populus trichocarpa)
STRING	cassava4.1_010584m	4e-78	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA290	24	186

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	8e-64	homeobox from Arabidopsis thaliana

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]