PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS58302.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family B3
Protein Properties Length: 159aa    MW: 17890.9 Da    PI: 5.116
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS58302.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.24.1e-1560135385
                 EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
          B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                 k ++  ++ + g + +p +f++e  +   +++ + l+d++g sW v l+y  ++    l++GW++Fv++ng++ g +++F+++
  EPS58302.1  60 K-TMDVSSINYGGMHVPVSFLNEARIR--SNMNIELRDRKGGSWPVFLNYISSK----LSRGWRRFVEDNGVEIGNTILFSFE 135
                 3.44677778899********888755..7899***************555555....9*********************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.6E-1653138IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.1E-1654139IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.71757149IPR003340B3 DNA binding domain
PfamPF023622.2E-1258135IPR003340B3 DNA binding domain
SMARTSM010198.5E-858149IPR003340B3 DNA binding domain
CDDcd100171.62E-1258145No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MSSSEERGVS ESETSSEMGR DSFKRKREPI SDYSDSPTEI SGEEDIKPSK LVKKNITFAK  60
TMDVSSINYG GMHVPVSFLN EARIRSNMNI ELRDRKGGSW PVFLNYISSK LSRGWRRFVE  120
DNGVEIGNTI LFSFEPGGNV LEATVQKNAR DDETISKEL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLS8DFZ61e-110S8DFZ6_9LAMI; Uncharacterized protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]