PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS58336.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family bHLH
Protein Properties Length: 123aa    MW: 13765.4 Da    PI: 10.5411
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS58336.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH57.91.8e-181573455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC..........TTS-STCHHHHHHHHHHHHHHH CS
         HLH  4 ahnerErrRRdriNsafeeLrellPkas.......kapskKlsKaeiLekAveYIksLq 55
                 hn  ErrRRdriN+++  L+el+P++        +  +k+ +Ka++L +A+eY+k+Lq
  EPS58336.1 15 VHNLSERRRRDRINEKMKALQELIPNCNkaknsflGSEKKRADKASMLDEAIEYLKMLQ 73
                6*************************888*****6666666*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-20994IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.1391172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.08E-151477No hitNo description
PfamPF000107.9E-161573IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-201581IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.6E-191778IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
ARPAVGTKRT RAAEVHNLSE RRRRDRINEK MKALQELIPN CNKAKNSFLG SEKKRADKAS  60
MLDEAIEYLK MLQLQVQMMS MGAGICMPPM MFPPGMQPMF PPPPHLPHFP IGMGMGGFGV  120
PDM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11924ERRRRD
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act as negative regulator of phyB-dependent light signal transduction. {ECO:0000269|PubMed:17485859}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by light in dark-grown etiolated seedlings. {ECO:0000269|PubMed:17485859}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027108072.11e-45transcription factor PIF3-like isoform X1
RefseqXP_027108073.11e-45transcription factor PIF3-like isoform X2
RefseqXP_027108074.14e-46transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15-like isoform X3
SwissprotQ0JNI92e-39PIL15_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15
TrEMBLS8C1S21e-84S8C1S2_9LAMI; Uncharacterized protein (Fragment)
STRINGXP_008453043.11e-41(Cucumis melo)
STRINGORGLA08G0194500.11e-41(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49652437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.12e-32phytochrome interacting factor 3-like 5
Publications ? help Back to Top
  1. Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T
    Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa.
    Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91
    [PMID:17485859]
  2. Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL
    An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15.
    N Biotechnol, 2011. 28(6): p. 788-97
    [PMID:21549224]
  3. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]