PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS58348.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family MYB_related
Protein Properties Length: 93aa    MW: 10734.9 Da    PI: 9.3986
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS58348.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.61.6e-09652347
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                      WT+   + + da + +  +   +W   ar +g g++ +++k ++qk+
       EPS58348.1  6 TWTAKQNKAFEDALATYDRDtpdRWQNLARAVG-GKSVEDVKRHYQKL 52
                     7*****************99*************.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.237153IPR017877Myb-like domain
SMARTSM007171.9E-7355IPR001005SANT/Myb domain
CDDcd001671.08E-6653No hitNo description
PfamPF002492.4E-6652IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.9E-5659IPR009057Homeodomain-like
SuperFamilySSF466891.71E-12760IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MNSSSTWTAK QNKAFEDALA TYDRDTPDRW QNLARAVGGK SVEDVKRHYQ KLVQDINHIE  60
SGKVPVPNYR DTNNGYSKMA EAQEQRMTYL KLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-31393793RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027089785.16e-43protein RADIALIS-like 3
RefseqXP_027092702.16e-43protein RADIALIS-like 3
RefseqXP_027149598.16e-43protein RADIALIS-like 3
SwissprotF4JVB88e-36RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLS8D6U57e-64S8D6U5_9LAMI; Uncharacterized protein
STRINGXP_008220806.18e-39(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.13e-38RAD-like 1
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]