PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS58447.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family RAV
Protein Properties Length: 243aa    MW: 28094.9 Da    PI: 10.2476
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS58447.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.14.4e-13957155
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                s++kGV   + +grW A+I++      + r++lg+f  +e Aa+a++aa+ +++g
  EPS58447.1  9 SRFKGVVPQP-NGRWGAQIYEK-----HHRVWLGTFNEEESAARAYDAAAIRFRG 57
                689***9788.8*********3.....5************************998 PP
2B398.54.2e-31124225193
                 EEEE-..-HHHHTT-EE--HHH.HTT.........---.....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkke...esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                 f+k+ tpsdv+k++rlv+pk+ ae++             +   + + l +ed++g++W+++++y+++s++yvltkGW++Fvk++ L++gD+++F+++g+
  EPS58447.1 124 FEKIVTPSDVGKLNRLVIPKQQAEKYlpfrfrlgeA---AgfcRLMLLNMEDSQGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKSLRAGDTITFYRSGQ 219
                 99*****************************86441...24557899************************************************9988 PP

                 SEE..E CS
          B3  88 sefelv 93 
                  + +l+
  EPS58447.1 220 PDNRLY 225
                 776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.86E-14966No hitNo description
SuperFamilySSF541717.19E-17966IPR016177DNA-binding domain
PfamPF008471.3E-8957IPR001471AP2/ERF domain
PROSITE profilePS5103219.8361065IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-201066IPR001471AP2/ERF domain
SMARTSM003801.3E-261071IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.109.6E-36120228IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.68E-30121227IPR015300DNA-binding pseudobarrel domain
CDDcd100171.91E-27123218No hitNo description
PROSITE profilePS5086314.029124230IPR003340B3 DNA binding domain
PfamPF023621.4E-27124225IPR003340B3 DNA binding domain
SMARTSM010191.8E-22124231IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
TASKKLPSSR FKGVVPQPNG RWGAQIYEKH HRVWLGTFNE EESAARAYDA AAIRFRGGDA  60
VTNFRDGAAD DAESRFLNSH SKSEIVDMLR KHTYEEELEQ SRRGGGSEMM IRRVPAELRR  120
EYLFEKIVTP SDVGKLNRLV IPKQQAEKYL PFRFRLGEAA GFCRLMLLNM EDSQGKVWRF  180
RYSYWNSSQS YVLTKGWSRF VKEKSLRAGD TITFYRSGQP DNRLYIDCGV HRVQPVRLFG  240
VNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-4312122611112DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001237600.11e-112RAV-like DNA-binding protein
RefseqXP_028186025.11e-112AP2/ERF and B3 domain-containing transcription repressor RAV2-like
SwissprotQ9C6M51e-105RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1
TrEMBLS8DGG50.0S8DGG5_9LAMI; Uncharacterized protein (Fragment)
STRINGGLYMA10G34760.11e-111(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29582453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.11e-102RAV family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  4. Sgamma T,Jackson A,Muleo R,Thomas B,Massiah A
    TEMPRANILLO is a regulator of juvenility in plants.
    Sci Rep, 2014. 4: p. 3704
    [PMID:24424565]
  5. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  6. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  7. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]