PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS58540.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family M-type_MADS
Protein Properties Length: 159aa    MW: 18566.7 Da    PI: 10.4075
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS58540.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.19.3e-181054246
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                +i n+s r+ ++ kR++g++KK +E+SvLCd++++ ii+++ + l
  EPS58540.1 10 FITNESERKASYKKRKKGLIKKVSEISVLCDVDACAIIYGPYNGL 54
                89**************************************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.6E-19162IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.54154IPR002100Transcription factor, MADS-box
CDDcd002663.04E-16287No hitNo description
SuperFamilySSF554551.57E-23297IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-9323IPR002100Transcription factor, MADS-box
PfamPF003191.1E-161052IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MTRKKVTLAF ITNESERKAS YKKRKKGLIK KVSEISVLCD VDACAIIYGP YNGLDSPEVW  60
PSPEKATAVV ERFRRLSEME QGKKMLNQDS FTRQRIRKLE ENLRRVRKEN KRAELEIFMF  120
RFMAGIVGFE GFDVADAAEM GWVVKQLLRE VNFRIQDLK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVTLAFITNESERKASYKKRK
22125KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088788.19e-64agamous-like MADS-box protein AGL80
TrEMBLS8BVC91e-112S8BVC9_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.B01455.1.p2e-55(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15322367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-42AGAMOUS-like 80
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]