PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS58618.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

LBD

Protein Properties

Length: 164aa MW: 18056.9 Da PI: 8.4971

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS58618.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	90	3e-28	4	107	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C+vlr++C+++C+l p++ p++q++++ +++k++G++ +++l++a p++ ++++++sl+yeA+ r+ +Pv+Ga+g+++++ ++ +q+++++ EPS58618.1 4 SCNGCRVLRKGCSPECTLKPCLqwidsPEAQANATLFLAKFYGRAGLINLINAGPQHLHPEIFRSLLYEACGRIINPVNGAIGLFFTGDWDRCQAAVDA 102 6***********************************************************************************************999 PP DUF260 95 allke 99 +l+++ EPS58618.1 103 VLRGS 107 88766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	15.784	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.1E-23	4	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSPECT LKPCLQWIDS PEAQANATLF LAKFYGRAGL INLINAGPQH 60 LHPEIFRSLL YEACGRIINP VNGAIGLFFT GDWDRCQAAV DAVLRGSPLM MKVSGEDDDQ 120 SDVYGGARWK NPVHGCDIRH ICKGAAADLN RIRIRKQPEK SAVT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011076777.1	8e-77	LOB domain-containing protein 42-like
Swissprot	Q9M886	2e-59	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	S8D7E8	1e-119	S8D7E8_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.O00688.1.p	2e-70	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA886	24	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	9e-62	LOB domain-containing protein 41

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]