PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS58693.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family GATA
Protein Properties Length: 79aa    MW: 8413.4 Da    PI: 6.4835
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS58693.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.12.1e-17137135
        GATA  1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35
                C++Cgt +  Tp++Rrgp+g++tLCnaCGl+++ kg+
  EPS58693.1  1 CRHCGTNEkcTPMMRRGPEGPRTLCNACGLMWANKGT 37
                **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004017.8E-6148IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.33E-12159No hitNo description
PfamPF003203.6E-15137IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.4E-14142IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS501149.737151IPR000679Zinc finger, GATA-type
PROSITE patternPS003440128IPR000679Zinc finger, GATA-type
CDDcd002021.03E-12145No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 79 aa     Download sequence    Send to blast
CRHCGTNEKC TPMMRRGPEG PRTLCNACGL MWANKGTLRD LTKGTTLLDA TLRNGSEENG  60
NFDAEEMVLG GGGNGHDSS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072744.11e-39GATA transcription factor 28
SwissprotQ8GXL71e-23GAT24_ARATH; GATA transcription factor 24
TrEMBLS8D7K35e-50S8D7K3_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.I01184.1.p6e-35(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.15e-26ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]