PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS58769.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family B3
Protein Properties Length: 215aa    MW: 23979.9 Da    PI: 10.6368
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS58769.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3106.31.5e-336114199
                 EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                 f+k ltpsdv+k++rlv+pk++ae++            ++  e+++ l +ede g++W+++++y+++s++yvltkGW++Fvk+++L++gD+v+F+++  
  EPS58769.1   6 FEKPLTPSDVGKLNRLVIPKQHAEKYlpmngggggtgtDSGAENGVLLDFEDEIGKTWRFRYSYWNSSQSYVLTKGWSRFVKEKRLDAGDVVTFSRH-- 102
                 99******************************9999995556699**************************************************54.. PP

                 SEE..EEEEE-S CS
          B3  88 sefelvvkvfrk 99 
                 ++ +l+++++r+
  EPS58769.1 103 RSSRLFIGWRRR 114
                 45567****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.93E-322114IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.9E-402122IPR015300DNA-binding pseudobarrel domain
CDDcd100174.37E-304109No hitNo description
SMARTSM010192.0E-296115IPR003340B3 DNA binding domain
PROSITE profilePS5086314.6636115IPR003340B3 DNA binding domain
PfamPF023629.4E-316114IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
DREPLFEKPL TPSDVGKLNR LVIPKQHAEK YLPMNGGGGG TGTDSGAENG VLLDFEDEIG  60
KTWRFRYSYW NSSQSYVLTK GWSRFVKEKR LDAGDVVTFS RHRSSRLFIG WRRRKPKNTI  120
TSPSPPPQTA IHSGGQNNAP KTTGKQQQQQ NPPPCFFFSR NTGSRIPVTF TGSPVSKNQT  180
AAGNSKRLRL FGVNLEFQSD EPEPSMPIDS PITVQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A6e-5011143113B3 domain-containing transcription factor NGA1
5os9_B6e-5011143113B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094282.13e-71B3 domain-containing protein At2g36080
SwissprotQ9FNI36e-60Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLS8BWL41e-157S8BWL4_9LAMI; Uncharacterized protein (Fragment)
STRINGVIT_08s0007g02810.t014e-68(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38012446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.22e-62B3 family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]