PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS58925.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family ARF
Protein Properties Length: 474aa    MW: 52191.3 Da    PI: 7.2385
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS58925.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.75.4e-24165266199
                 EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                 f+k+lt sd++++g +++p++ ae++      +++ ++ ++l+ +d++g +W++++iyr++++r++lt+GW++Fv ++++ +gD v+F   + +++el+
  EPS58925.1 165 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyKEQRPC-QELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSSFVGQKNIVSGDAVLFL--RGEGRELW 260
                 99****************************87555556.59************************************************..449999** PP

                 EEEE-S CS
          B3  94 vkvfrk 99 
                 ++++r+
  EPS58925.1 261 LGIRRA 266
                 ***996 PP
2Auxin_resp95.67.3e-32288372182
  Auxin_resp   1 aahaastksvFevvYnPras.tseFvvkvekvekalk..vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                 +a+a+s++ +F+++Y+Pra+ ++eF+v+++++ k      +v vG+Rfkm+++ +d +err+sG+v+g+sd+dp+rWpnSkWr+L
  EPS58925.1 288 VANAVSSNGPFSIFYSPRAKnRAEFIVSYKQYAKCAAaaGQVPVGTRFKMRLDFDDTPERRFSGVVTGISDVDPYRWPNSKWRCL 372
                 689***************96369*********986553489*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.31E-43156281IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-39157279IPR015300DNA-binding pseudobarrel domain
CDDcd100173.60E-21163265No hitNo description
PfamPF023623.3E-22165266IPR003340B3 DNA binding domain
PROSITE profilePS5086312.21165267IPR003340B3 DNA binding domain
SMARTSM010193.4E-22165267IPR003340B3 DNA binding domain
PfamPF065071.4E-26288372IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010050Biological Processvegetative phase change
GO:0010158Biological Processabaxial cell fate specification
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MEIDLNHGVV VVQSTNSSSS RSSNAASSSS SSSSSSPPPP PPPPCSVSSS SSPSSICKEL  60
WHACAGPLTF LPKKWSLVVY FPQGHLEQQT LSSPVEEIDT SFRLPSQIFC RVLDVALLAN  120
KENDEVYTKL TLLPLPEMMV DDDDDDEGND DGRDDLPSKS TSHMFCKTLT ASDTSTHGGF  180
SVPRRAAEDC FPPLDYKEQR PCQELVAKDL HGVEWKFRHI YRGQPRRHLL TTGWSSFVGQ  240
KNIVSGDAVL FLRGEGRELW LGIRRAARPR NGLPDSVASS RAAVLAPVAN AVSSNGPFSI  300
FYSPRAKNRA EFIVSYKQYA KCAAAAGQVP VGTRFKMRLD FDDTPERRFS GVVTGISDVD  360
PYRWPNSKWR CLAVRWDNDA SIGRHDRVSP WEIDLSAHCP QFAVESSPRI KKLRFGGSLV  420
GGGGERSDFE ESSPSMRSSE NAGGSESQQR PPLLFRSDRI DRRPSFETQP PANA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A1e-1205539418353Auxin response factor 1
4ldy_B1e-1205539418353Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089884.10.0auxin response factor 4 isoform X2
SwissprotQ9ZTX91e-157ARFD_ARATH; Auxin response factor 4
TrEMBLS8BWH10.0S8BWH1_9LAMI; Auxin response factor (Fragment)
STRINGGorai.006G120400.10.0(Gossypium raimondii)
STRINGMigut.N02611.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51432234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60450.11e-154auxin response factor 4
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Ozerova LV,Krasnikova MS,Troitsky AV,Solovyev AG,Morozov SY
    TAS3 Genes for small ta-siARF RNAs in plants belonging to subtribe Senecioninae: occurrence of prematurely terminated RNA precursors.
    Mol. Gen. Mikrobiol. Virusol., 2013.
    [PMID:24003511]
  3. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]
  4. Pashkovskiy PP,Kartashov AV,Zlobin IE,Pogosyan SI,Kuznetsov VV
    Blue light alters miR167 expression and microRNA-targeted auxin response factor genes in Arabidopsis thaliana plants.
    Plant Physiol. Biochem., 2016. 104: p. 146-54
    [PMID:27031426]
  5. Matsumura Y, et al.
    A genetic link between epigenetic repressor AS1-AS2 and a putative small subunit processome in leaf polarity establishment of Arabidopsis.
    Biol Open, 2016. 5(7): p. 942-54
    [PMID:27334696]
  6. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]
  7. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]