PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS58967.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

WRKY

Protein Properties

Length: 237aa MW: 25917.5 Da PI: 5.0501

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS58967.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.1	1.2e-30	64	121	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers++dp+++++tY+++Hnh+ EPS58967.1 64 DNWSWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRHDPTTLVVTYSSDHNHP 121 99**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	7.2E-32	55	123	IPR003657	WRKY domain
PROSITE profile	PS50811	32.478	57	123	IPR003657	WRKY domain
SuperFamily	SSF118290	7.72E-27	58	123	IPR003657	WRKY domain
SMART	SM00774	1.2E-35	62	122	IPR003657	WRKY domain
Pfam	PF03106	5.3E-26	64	121	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
DREQEEDSST PTENTAESPL SGDEDAYTPL PKKSRRGANK RVVTVAVEGG DGYRSKGEVY 60 PPPDNWSWRK YGQKPIKGSP YPRGYYRCSS SKGCPARKQV ERSRHDPTTL VVTYSSDHNH 120 PLPAAASAKT QVRPPAKPSS IHHHHPPEEE EEDNSPAAAS AAEEPPPDNG FTELAGDFGW 180 LCGVGPALMD EMTLVPAPAW AAAHADVEVF MPIGEEDKHL FGDLGDLPEY SVVFRRC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	9e-20	64	123	16	74	WRKY transcription factor 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012837543.1	1e-98	PREDICTED: probable WRKY transcription factor 69
TrEMBL	S8DHX0	1e-174	S8DHX0_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.M00241.1.p	4e-98	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7468	22	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29280.1	3e-55	WRKY DNA-binding protein 65

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]