PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS59032.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

SRS

Protein Properties

Length: 102aa MW: 10972.1 Da PI: 10.4116

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS59032.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	117.3	2.1e-36	12	96	2	82
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa....aeaaskrkrelkskk 82 +sg++sC dCGnqakkdCah+RCRtCCksrgf+C+thvkstWvpaakrrerq+q++++s ++++++ a+a+skr++++++++ EPS59032.1 12 GSGGISCLDCGNQAKKDCAHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQHQQQQSSCNTNHRSetppAAANSKRQKREETTA 96 57899**********************************************8888777666665554566555555555443222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.0E-32	15	96	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.3E-27	17	59	IPR006510	Zinc finger, lateral root primordium type 1

Sequence ? help Back to Top
Protein Sequence Length: 102 aa Download sequence Send to blast
GSRGFAGGSG GGSGGISCLD CGNQAKKDCA HMRCRTCCKS RGFQCQTHVK STWVPAAKRR 60 ERQHQQQQSS CNTNHRSETP PAAANSKRQK REETTAAANF TS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269\|PubMed:24142382, ECO:0000269\|PubMed:24884371}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009412816.1	3e-30	PREDICTED: protein SHI RELATED SEQUENCE 1-like
Swissprot	K4B6C9	2e-28	EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
TrEMBL	S8DHZ7	1e-67	S8DHZ7_9LAMI; Uncharacterized protein (Fragment)
STRING	GSMUA_Achr1P18650_001	3e-29	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA678	24	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	1e-23	SHI-related sequence 5

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]