PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS59057.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family ARF
Protein Properties Length: 629aa    MW: 69626.4 Da    PI: 6.1701
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS59057.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.78.1e-22116217199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f k+lt+sd+++ g +++p+ +ae++         ++ +   ++ +d +g+++++++iyr++++r++lt+GW++Fv++++L +gD++vF +   +++ l
  EPS59057.1 116 FAKTLTQSDANNGGGFSVPRYCAETIfppldftADPPVQ--NVIARDVHGETFRFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFWR--ADNGGL 210
                 89*****************************98666666..6************************************************4..366778 PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +v+++r+
  EPS59057.1 211 CVGIRRA 217
                 ****996 PP
2Auxin_resp103.42.8e-34273355283
  Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                 a  a ++++Fev Y+Pr  t+eF++k+++v +a+k+++  GmRfkm fetedss++++ +Gtv++v+ +dp+rWpnS+Wr+L+
  EPS59057.1 273 AYLAVNSQPFEVEYHPRLNTPEFCIKASSVISAMKIQWFSGMRFKMPFETEDSSKISWfMGTVASVQISDPIRWPNSPWRMLQ 355
                 6678899**************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.2E-37108222IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-28113228IPR015300DNA-binding pseudobarrel domain
CDDcd100176.42E-21115216No hitNo description
SMARTSM010191.3E-20116218IPR003340B3 DNA binding domain
PfamPF023623.6E-20116217IPR003340B3 DNA binding domain
PROSITE profilePS5086311.194116218IPR003340B3 DNA binding domain
PfamPF065073.5E-29272355IPR010525Auxin response factor
PROSITE profilePS5174514.905541622IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 629 aa     Download sequence    Send to blast
EDVENCLDSE LWHACAGVMV QMPPVNSKVF YFPQGHAEHA LSPVDFAESS RIPAMILCKV  60
DRVKYLADPD TDEVYARIRL VPDIGNELCT DEVYDDGGGG GSAAASGSRE RQHTSFAKTL  120
TQSDANNGGG FSVPRYCAET IFPPLDFTAD PPVQNVIARD VHGETFRFRH IYRGTPRRHL  180
LTTGWSSFVN QKKLVAGDSI VFWRADNGGL CVGIRRAKKN HSPHRDRAIL SRWNSAGVNG  240
FSSSLEPDNM MSLIGSSMAD KPRVKPESVI EAAYLAVNSQ PFEVEYHPRL NTPEFCIKAS  300
SVISAMKIQW FSGMRFKMPF ETEDSSKISW FMGTVASVQI SDPIRWPNSP WRMLQVAWDE  360
PDLLQNVNSV SPWLVEMVVS GLPLPPPPPP LSSPFLQPRK KMRLIDFPLD ATTHYGLPSF  420
TGRPQNSCVY LQEAISSAGG IQGARHVRIP FPQPLSTSNF LDAAARNHRP KVVPRKKNDD  480
SSDADQNVGC LLSIGNNSHM AAAAAEKTEN QIRLFGKPIS IDRRKSSSPP SSETTTTTTT  540
RRCCKVFLDS EDAGKSLDLP GIGSYEEMYA RLEEMFELVD DVKGRVFYCD SDDDGVVKWP  600
GDVPYSEFAE NAKRVTVLTD PGNNDSSER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A4e-79737651388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089288.10.0auxin response factor 18 isoform X2
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLS8DI180.0S8DI18_9LAMI; Auxin response factor (Fragment)
STRINGSolyc11g069500.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.11e-180auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  3. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]