PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS59092.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family M-type_MADS
Protein Properties Length: 179aa    MW: 20320.4 Da    PI: 10.7364
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS59092.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.72.7e-221765149
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                k ie++  r+vtfskRr g++KKA ELS+LC++++aviifs  g+ y +
  EPS59092.1 17 KLIEDDNARTVTFSKRRVGVFKKATELSILCGVQIAVIIFSFAGRAYSF 65
                569*****************************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554557.85E-26982IPR002100Transcription factor, MADS-box
SMARTSM004325.4E-31968IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.777969IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-181131IPR002100Transcription factor, MADS-box
PfamPF003192.5E-221965IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-183146IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-184667IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
PPAQRRRSLG RRKIEMKLIE DDNARTVTFS KRRVGVFKKA TELSILCGVQ IAVIIFSFAG  60
RAYSFGHPDV DSVIGKFSNR NATAPDDERE SSVQGTRIHG LVVQQLKEEL DEKKERLMDQ  120
KRKGREVSEL LRNSPQQIIS EESLRLLDMP RLKKLRGALV KLKEDILQQV QGKNKVGAD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mnm_A1e-16118818100PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
1mnm_B1e-16118818100PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
5f28_A1e-16992182MEF2C
5f28_B1e-16992182MEF2C
5f28_C1e-16992182MEF2C
5f28_D1e-16992182MEF2C
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012827635.14e-49PREDICTED: uncharacterized protein LOC105948920
TrEMBLS8DI541e-125S8DI54_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.I00404.1.p4e-51(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1565666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-26AGAMOUS-like 62
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]