PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS59222.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

HD-ZIP

Protein Properties

Length: 174aa MW: 19223.6 Da PI: 9.384

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS59222.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	53.4	4.3e-17	10	62	5	57
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +++++q++ Le+ F r++++e++ LA++lg++ rq+ vW+qN+Ra++k+ EPS59222.1 10 KRLSHDQVRLLEANFDAGRKLDTERKFSLARELGVPPRQIAVWYQNKRARWKN 62 4689***********************************************95 PP
2	HD-ZIP_I/II	105.5	4.1e-34	8	99	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +k+rls++qv+lLE +F++ +kL++erK +lareLg+ prq+avW+qn+RAR+k++ lE dy aL+ +++a ++++++Lekeve+Lr+el++ EPS59222.1 8 QKKRLSHDQVRLLEANFDAGRKLDTERKFSLARELGVPPRQIAVWYQNKRARWKNQSLELDYGALQLRLEAAVADKKELEKEVESLRSELRR 99 69**************************************************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.127	3	63	IPR001356	Homeobox domain
SMART	SM00389	1.4E-13	5	67	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.41E-16	8	71	IPR009057	Homeodomain-like
CDD	cd00086	5.37E-12	9	64	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.7E-17	10	69	IPR009057	Homeodomain-like
Pfam	PF00046	1.9E-14	10	62	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	38	61	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009637	Biological Process	response to blue light
GO:0009646	Biological Process	response to absence of light
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
NHKSKALQKK RLSHDQVRLL EANFDAGRKL DTERKFSLAR ELGVPPRQIA VWYQNKRARW 60 KNQSLELDYG ALQLRLEAAV ADKKELEKEV ESLRSELRRA HEALYGFRSE YAATATAGAP 120 PTAAVALVGS SLSSGGSSSM NDDVSENWAN GETGGLQFEE LYACLMLGAS KGRN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011082709.1	5e-71	homeobox-leucine zipper protein ATHB-52
TrEMBL	S8DIH0	1e-123	S8DIH0_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.M00776.1.p	8e-64	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2715	24	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53980.1	1e-29	homeobox protein 52

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]