PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS59263.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

Dof

Protein Properties

Length: 114aa MW: 13088.6 Da PI: 9.8069

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS59263.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	90.2	1.8e-28	16	73	5	62
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 l+cprC s +tkf y+nn++ +qPr++C++C+r Wt+GG lrn+P Gg +++ ++ss EPS59263.1 16 PLQCPRCGSLDTKFRYFNNHNFAQPRHYCRTCKRQWTAGGNLRNIPAGGKTKQTEASS 73 579**********************************************999887765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-16	10	70	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	23.589	17	71	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.5E-27	17	70	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 114 aa Download sequence Send to blast
ETEENQPKPL EQVPVPLQCP RCGSLDTKFR YFNNHNFAQP RHYCRTCKRQ WTAGGNLRNI 60 PAGGKTKQTE ASSSRTNHTF RLAQTSLREG EPGKIHQPPQ SFERSNLQWI TDLP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements. {ECO:0000269\|PubMed:12887587}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin and salicylic acid (SA). Repressed by jasmonic acid (JA). {ECO:0000269\|PubMed:10758484, ECO:0000269\|PubMed:12887587}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012846307.1	3e-25	PREDICTED: dof zinc finger protein DOF3.2-like
Swissprot	Q9M2U1	6e-21	DOF36_ARATH; Dof zinc finger protein DOF3.6
TrEMBL	S8D963	1e-79	S8D963_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.N01984.1.p	1e-24	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA16144	5	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.1	3e-23	OBF-binding protein 3

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]