PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS59283.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family HD-ZIP
Protein Properties Length: 354aa    MW: 39508.4 Da    PI: 8.7724
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS59283.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.45.6e-191371357
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                k  ++t+eq+e+Le+l++++++p+  +r++L +++    +++ +q+kvWFqNrR +ek+
  EPS59283.1 13 KYVRYTPEQVEALERLYHECPKPTSMRRQQLIRECpilsSIEPKQIKVWFQNRRCREKQ 71
                5678*****************************************************97 PP
2START154.58.7e-491513532199
                 HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXX CS
       START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvael 98 
                 +aee+++e+++ka+ ++  W +++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d   W +++++ ++l+v+ ++  g+++l + ++
  EPS59283.1 151 IAEETLTEFLSKATGTAIEWIQMPGMKPGPDSIGIISISHGCPGMAARACGLVGLEPT-RVAEVLKDQTSWCRDFRALDVLNVLPTAngGTIELLYVQM 248
                 789*******************************************************.999*****99****************9999********** PP

                 TTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHH CS
       START  99 qalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaega 193
                 +a+s l+p Rdf+ +Ry+  +g+g++v++  S+ ++ + p+    ++++Rae++pSg+li+ +++g+s +++v+h++l++++++++lr+l++s+++ ++
  EPS59283.1 249 YAPSNLAPgRDFWLLRYTSVMGDGSLVVCVKSLANTHNGPNippVANFARAEMFPSGFLIRHCEGGGSMIHIVDHMNLEAWSVPEVLRPLYESSTVLAQ 347
                 ****************************************99999****************************************************** PP

                 HHHHHH CS
       START 194 ktwvat 199
                 ++++a 
  EPS59283.1 348 RITMAV 353
                 **9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.7E-18875IPR009057Homeodomain-like
PROSITE profilePS5007115.856872IPR001356Homeobox domain
SMARTSM003893.4E-161076IPR001356Homeobox domain
CDDcd000868.70E-161373No hitNo description
PfamPF000461.6E-161471IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.7E-191571IPR009057Homeodomain-like
CDDcd146861.74E-565104No hitNo description
PROSITE profilePS5084823.329141354IPR002913START domain
SuperFamilySSF559613.16E-31144338No hitNo description
Gene3DG3DSA:3.30.530.202.3E-20149333IPR023393START-like domain
SMARTSM002341.1E-26150353IPR002913START domain
PfamPF018525.3E-46151353IPR002913START domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
ASSATSASSD SGKYVRYTPE QVEALERLYH ECPKPTSMRR QQLIRECPIL SSIEPKQIKV  60
WFQNRRCREK QRKEASRLQS VNRKLAAMNK LLMEENDRLQ KQVSQLVYEN SYFRQRKEVA  120
KKDTSCESAV TSRQKNQFPL RDSSPAGLLS IAEETLTEFL SKATGTAIEW IQMPGMKPGP  180
DSIGIISISH GCPGMAARAC GLVGLEPTRV AEVLKDQTSW CRDFRALDVL NVLPTANGGT  240
IELLYVQMYA PSNLAPGRDF WLLRYTSVMG DGSLVVCVKS LANTHNGPNI PPVANFARAE  300
MFPSGFLIRH CEGGGSMIHI VDHMNLEAWS VPEVLRPLYE SSTVLAQRIT MAVM
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
UniProtProbable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269|PubMed:11402194, ECO:0000269|PubMed:15598805}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
UniProtINDUCTION: By auxin. Repressed by miR165. {ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:8575317}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072422.10.0LOW QUALITY PROTEIN: homeobox-leucine zipper protein ATHB-15
SwissprotQ391230.0ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLS8D9750.0S8D975_9LAMI; Uncharacterized protein (Fragment)
STRINGXP_009593967.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.30.0HD-ZIP family protein
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  3. Hategan L,Godza B,Kozma-Bognar L,Bishop GJ,Szekeres M
    Differential expression of the brassinosteroid receptor-encoding BRI1 gene in Arabidopsis.
    Planta, 2014. 239(5): p. 989-1001
    [PMID:24488524]
  4. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  5. Kakehi J, et al.
    Mutations in ribosomal proteins, RPL4 and RACK1, suppress the phenotype of a thermospermine-deficient mutant of Arabidopsis thaliana.
    PLoS ONE, 2015. 10(1): p. e0117309
    [PMID:25625317]
  6. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  7. Liu S, et al.
    Expression of wild-type PtrIAA14.1, a poplar Aux/IAA gene causes morphological changes in Arabidopsis.
    Front Plant Sci, 2015. 6: p. 388
    [PMID:26082787]
  8. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]
  9. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]
  10. Yamazaki K, et al.
    Suppression of DELLA signaling induces procambial cell formation in culture.
    Plant J., 2018. 94(1): p. 48-59
    [PMID:29383774]