PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS59324.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

SRS

Protein Properties

Length: 191aa MW: 20996.2 Da PI: 8.0322

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS59324.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	184.2	5.2e-57	16	156	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkelet 102 +++CqdCGnqakkdC+h RCRtCC+srgf+C+thvkstWvp+++rr r+ ++ ++++aa+ + s +++++ ++ +++ + l+ EPS59324.1 16 SSSRCQDCGNQAKKDCEHLRCRTCCRSRGFQCQTHVKSTWVPVSRRRPRHLVMHHHHQSNAAAVTV--SM-------DHTQNPKRY-RENHAPLLGLDG 104 6789*******************************************955554443333222211..11.......222223333.35677888999 PP DUF702 103 sslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +++P evs +avfrcvrvssvd++ +++aYqt+vsigGh f GiLydqG+e+ EPS59324.1 105 RDFPGEVSFPAVFRCVRVSSVDNAVDQYAYQTSVSIGGHNFTGILYDQGPEN 156 **************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	9.7E-58	17	155	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	7.2E-26	20	61	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	8.2E-24	107	154	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MMRNEEVEAL NSESSSSSRC QDCGNQAKKD CEHLRCRTCC RSRGFQCQTH VKSTWVPVSR 60 RRPRHLVMHH HHQSNAAAVT VSMDHTQNPK RYRENHAPLL GLDGRDFPGE VSFPAVFRCV 120 RVSSVDNAVD QYAYQTSVSI GGHNFTGILY DQGPENDGTT ANFLTSSSGS ALLQQPNFLS 180 GSSTAAAISP A

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269\|PubMed:10368174, ECO:0000269\|PubMed:11706176, ECO:0000269\|PubMed:16740146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019261916.1	1e-70	PREDICTED: protein SHI RELATED SEQUENCE 3-like
Swissprot	Q9XGX0	5e-45	SHI_ARATH; Protein SHORT INTERNODES
TrEMBL	S8BY38	1e-141	S8BY38_9LAMI; Uncharacterized protein (Fragment)
STRING	XP_009785993.1	2e-67	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4156	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	3e-47	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Islam MA, et al. Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants. PLoS ONE, 2013. 8(1): p. e53377 [PMID:23308204] Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Pfannebecker KC,Lange M,Rupp O,Becker A An Evolutionary Framework for Carpel Developmental Control Genes. Mol. Biol. Evol., 2017. 34(2): p. 330-348 [PMID:28049761] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]