PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS59332.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

TCP

Protein Properties

Length: 225aa MW: 24234.4 Da PI: 9.0281

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS59332.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	114.5	1.4e-35	43	138	2	85
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa...........sec.eaesssssasns 85 a k +++++h kv+gR+RR+R++a+caar+F+L++eLG+ +d++tieWLl+ a+p+i+++t++++++a s++ ++++ +++++++ EPS59332.1 43 ASKPNSTKDRHKKVNGRGRRIRMPALCAARVFQLTRELGHRSDGETIEWLLRHAEPSIIAATRSGTIPAaaisasaelppSNMaSSSAVVQQQQAP 138 67899***********************************************************88888444332222221111112222222211 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.5E-31	48	136	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.777	49	103	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MFLQISSANV HCVPSALPSS SSADADVSAG NSRPKASISK KTASKPNSTK DRHKKVNGRG 60 RRIRMPALCA ARVFQLTREL GHRSDGETIE WLLRHAEPSI IAATRSGTIP AAAISASAEL 120 PPSNMASSSA VVQQQQAPTA GPVMSFSIHP LASKHHPINS SHLFGLPHAD LNCRLDLCQT 180 PPASNIPPEY LRFNQLPFTT LLLQPTTAEE EAEEQQRHMV NGDNQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020553454.1	5e-55	transcription factor TCP11-like
TrEMBL	S8DIQ0	1e-164	S8DIQ0_9LAMI; Uncharacterized protein
STRING	Migut.J00521.1.p	4e-49	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	4e-35	TCP family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]