PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS59347.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family ERF
Protein Properties Length: 92aa    MW: 10450.7 Da    PI: 9.7746
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS59347.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.4e-19857255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                +y+GVr++k +g++vAeIr p   + +  r++lg+++taeeAa+a +aa  +l+g
  EPS59347.1  8 RYRGVRRRK-WGKFVAEIRMP---N-CrDRIWLGSYDTAEEAARAFDAAQYCLRG 57
                6*****998.**********8...3.45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.67E-25867No hitNo description
PROSITE profilePS5103222.049865IPR001471AP2/ERF domain
SMARTSM003803.5E-31871IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-29866IPR001471AP2/ERF domain
PfamPF008474.1E-13857IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-21866IPR016177DNA-binding domain
PRINTSPR003671.3E-10920IPR001471AP2/ERF domain
PRINTSPR003671.3E-103147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
PSPSAAVRYR GVRRRKWGKF VAEIRMPNCR DRIWLGSYDT AEEAARAFDA AQYCLRGRGA  60
RFNFPDDPPE IANGESMTPE EIRDAAARFA RS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-188671474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022888889.17e-44ethylene-responsive transcription factor ERF017-like
SwissprotQ9C5912e-40ERF16_ARATH; Ethylene-responsive transcription factor ERF016
TrEMBLS8DIR12e-59S8DIR1_9LAMI; Uncharacterized protein (Fragment)
STRINGGorai.001G016800.18e-43(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19392466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.13e-34ERF family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]