PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS59351.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

GRF

Protein Properties

Length: 138aa MW: 15556.4 Da PI: 10.1086

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS59351.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	79.5	3.1e-25	81	125	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e+ EPS59351.1 81 DPEPGRCRRTDGKKWRCSKDAHPDSKYCERHMHRGRNRSRKPVES 125 79****************************************997 PP
2	QLQ	65.2	1.6e-22	13	48	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTa Q+q+L++Q+++yKyL+a++PvP++L+++i++ EPS59351.1 13 PFTAGQWQELEHQAMIYKYLVAGVPVPADLVLPIKR 48 9*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	7.9E-12	12	48	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	22.55	13	48	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	1.8E-16	13	46	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.831	81	125	IPR014977	WRC domain
Pfam	PF08879	1.4E-21	82	124	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 138 aa Download sequence Send to blast
GGGDLGSGYR PPPFTAGQWQ ELEHQAMIYK YLVAGVPVPA DLVLPIKRSF DAISARFFHH 60 HHHHHHPSLG YVSSYYGKKF DPEPGRCRRT DGKKWRCSKD AHPDSKYCER HMHRGRNRSR 120 KPVESSSSAT ATTTSSSS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006361251.1	5e-69	PREDICTED: growth-regulating factor 4-like
Refseq	XP_015170685.1	5e-69	PREDICTED: growth-regulating factor 4-like
Refseq	XP_015170686.1	5e-69	PREDICTED: growth-regulating factor 4-like
Refseq	XP_016550497.1	5e-69	PREDICTED: growth-regulating factor 4-like
Swissprot	Q6AWY6	3e-60	GRF3_ORYSJ; Growth-regulating factor 3
TrEMBL	S8C4R0	6e-98	S8C4R0_9LAMI; Uncharacterized protein (Fragment)
STRING	PGSC0003DMT400047580	2e-68	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA743	23	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	6e-44	growth-regulating factor 5

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]