PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS59431.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family TCP
Protein Properties Length: 231aa    MW: 24723.8 Da    PI: 8.9571
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS59431.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP91.22.2e-2849120273
         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73 
                  g kdrhsk++T +g+RdRRvRls+++a++++dLq++L + ++sk ++WLl  ak+ i+el+ ++ ++++ c
  EPS59431.1  49 FGSKDRHSKVCTVKGLRDRRVRLSIPTAIQLYDLQERLNLGQPSKVVDWLLDVAKKDIDELPPLQIPQEMLC 120
                 578************************************************************966666444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.82951109IPR017887Transcription factor TCP subgroup
PfamPF036343.1E-2551112IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MFSGKGGGAE EENGGRLPKL KSHAAAPTIT SWSRSRSKDP RIVRVSRAFG SKDRHSKVCT  60
VKGLRDRRVR LSIPTAIQLY DLQERLNLGQ PSKVVDWLLD VAKKDIDELP PLQIPQEMLC  120
WPPPPPPPPP ENEDVGFPDQ GQMGCFNNGG GNFFRWGDSF GGGGGHDLEH GFSLVQLQPC  180
YVAQQMSAGF YSGGGGGGGG GGGGGGGRAA VMPMHFLNDG NGNRFHSSWK L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A7e-1856110155Putative transcription factor PCF6
5zkt_B7e-1856110155Putative transcription factor PCF6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLS8C4V71e-167S8C4V7_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8212499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.12e-42plastid transcription factor 1
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]