PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS59520.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family GRAS
Protein Properties Length: 501aa    MW: 55476.7 Da    PI: 6.3515
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS59520.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS416.62.2e-1271305011373
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l++lL++cAea+s++   + ++l+ + +  +s +g+p+qRl ay++e+L ar   s+ ++y++l++ +    +s++ l+++++++e++P+lkf++++aN
  EPS59520.1 130 LKQLLIACAEALSENRIVEFEELIGHARGVVSVSGEPIQRLGAYMLEGLVARKEASGLNIYRSLRCHQPM-PESKDLLSYMHILYEICPYLKFGYMAAN 227
                 689****************************************************************998.58999*********************** PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  aI ea ++e+++Hi+Df+i qG+QW++LlqaLa+Rp+gpp++RiTg+++p s+  +   l ++g+rLa + e++ +p+ef++ v     d++ e+L  
  EPS59520.1 228 GAIAEACKNEDAIHIVDFQIAQGTQWMTLLQALAARPGGPPRVRITGIDDPVSEyaRGAGLAAVGRRLAAVSEKFSIPVEFHP-VPVFAPDVTREMLGA 325
                 ***************************************************99999999************************.688899********* PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 +pgEalaVn+ lqlh++ desv+++++rd +L++v+sl P+vv++veqe++ n+++Fl rf eal+yysa+f+s++++++r+s+eri+vE+++l+r+iv
  EPS59520.1 326 RPGEALAVNFPLQLHHTADESVDVSNPRDGILRMVRSLGPRVVTLVEQESNANTAPFLPRFKEALDYYSAMFESIDVTMARDSRERINVEQHCLARDIV 424
                 *************************************************************************************************** PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                 nv+aceg+er+erhe l+kW+ r+++aGF+p pl++++++ +  llr ++ d y++ e++g+++lgWkdr+Lvs+SaW
  EPS59520.1 425 NVIACEGKERVERHELLGKWQLRFKMAGFRPFPLNSYVNSVIGGLLRSYS-DHYTLTERDGAMLLGWKDRNLVSASAW 501
                 **************************************************.66************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565104483IPR005202Transcription factor GRAS
PfamPF035147.8E-125130501IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009640Biological Processphotomorphogenesis
GO:0005737Cellular Componentcytoplasm
GO:0004871Molecular Functionsignal transducer activity
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
SSNSSSLVHN FFHQPTPPYT YSDAVPSFLP NPSVTHALWK LEAALMTPDD DEEVATSEDP  60
FLGDSKRSQE PSGSSSRPWK HSESPPTNSR YGGSSSRSGG RQMIHFQRQQ DALDSSSLAQ  120
LQSSNPPNNL KQLLIACAEA LSENRIVEFE ELIGHARGVV SVSGEPIQRL GAYMLEGLVA  180
RKEASGLNIY RSLRCHQPMP ESKDLLSYMH ILYEICPYLK FGYMAANGAI AEACKNEDAI  240
HIVDFQIAQG TQWMTLLQAL AARPGGPPRV RITGIDDPVS EYARGAGLAA VGRRLAAVSE  300
KFSIPVEFHP VPVFAPDVTR EMLGARPGEA LAVNFPLQLH HTADESVDVS NPRDGILRMV  360
RSLGPRVVTL VEQESNANTA PFLPRFKEAL DYYSAMFESI DVTMARDSRE RINVEQHCLA  420
RDIVNVIACE GKERVERHEL LGKWQLRFKM AGFRPFPLNS YVNSVIGGLL RSYSDHYTLT  480
ERDGAMLLGW KDRNLVSASA W
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-6513750126378Protein SCARECROW
5b3h_A7e-6513750125377Protein SCARECROW
5b3h_D7e-6513750125377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011095306.10.0scarecrow-like protein 21
RefseqXP_020553937.10.0scarecrow-like protein 21
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLS8BY440.0S8BY44_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.M01823.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34412448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-166GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]