PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS59561.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

bHLH

Protein Properties

Length: 104aa MW: 11179.4 Da PI: 8.9781

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS59561.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.8	2.6e-10	72	100	2	30
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 2 rrahnerErrRRdriNsafeeLrellPka 30 r++h +Er+RR+++N+ ++ Lr+l+P++ EPS59561.1 72 RVSHITVERNRRKQMNDHLSVLRSLMPSL 100 899************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.077	70	104	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.76E-8	71	102	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.9E-8	72	101	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.21E-7	72	104	No hit	No description
Pfam	PF00010	1.3E-7	72	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 104 aa Download sequence Send to blast
SDDIFSILEA LESVVSYAPP AVEGSGGGGG GGFGFQTSTR SSSSLETETE QKESSMSKRQ 60 KVGAGDSYAP PRVSHITVER NRRKQMNDHL SVLRSLMPSL YVKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012090117.1	8e-23	transcription factor SPEECHLESS
Refseq	XP_022891746.1	7e-23	transcription factor SPEECHLESS-like
TrEMBL	S8C549	5e-69	S8C549_9LAMI; Uncharacterized protein (Fragment)
STRING	XP_002513589.1	4e-22	(Ricinus communis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53210.1	1e-13	bHLH family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]