PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS59677.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family SBP
Protein Properties Length: 76aa    MW: 8949.08 Da    PI: 9.1974
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS59677.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.89.8e-41175276
                -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
         SBP  2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76
                Cqve+C+ad++  k+yhrrh+vCe h+ka +vl++g  qrfCqqCsrfhelsefD+ krsCrrrLa+hnerrrk+
  EPS59677.1  1 CQVESCSADMAAEKQYHRRHRVCESHAKAVAVLLDGAWQRFCQQCSRFHELSEFDDVKRSCRRRLAGHNERRRKS 75
                *************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.5E-30162IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.248175IPR004333Transcription factor, SBP-box
SuperFamilySSF1036129.42E-36175IPR004333Transcription factor, SBP-box
PfamPF031106.0E-33174IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 76 aa     Download sequence    Send to blast
CQVESCSADM AAEKQYHRRH RVCESHAKAV AVLLDGAWQR FCQQCSRFHE LSEFDDVKRS  60
CRRRLAGHNE RRRKSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-341741184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015056436.13e-37squamosa promoter-binding protein 1-like
SwissprotQ387415e-37SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBLS8DJK74e-47S8DJK7_9LAMI; Uncharacterized protein (Fragment)
STRINGVIT_10s0003g00050.t012e-36(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74924105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.11e-38squamosa promoter binding protein-like 3
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Klein J,Saedler H,Huijser P
    A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA.
    Mol. Gen. Genet., 1996. 250(1): p. 7-16
    [PMID:8569690]