PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS59748.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

DBB

Protein Properties

Length: 114aa MW: 12744.4 Da PI: 6.9404

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS59748.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	17.4	9.4e-06	8	49	5	40
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 C+ ++e + +C+++ lC +C ++ H+ H+++ EPS59748.1 8 LCEYCGERRSVVYCRSDMAGLCLSCDSKVHSAnalsrrHSRT 49 5*****************************657777778765 PP
2	zf-B_box	22.4	2.5e-07	50	93	4	40
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvv 40 +C+++ ++++ C d + lC++C eH++ Ht++ EPS59748.1 50 LICERCASQPAFVRCIDERATLCQSCDWMEHHQgasssppHTRE 93 69************************999954449999999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	5.7E-9	4	51	IPR000315	B-box-type zinc finger
CDD	cd00021	8.13E-5	8	51	No hit	No description
PROSITE profile	PS50119	9.186	8	51	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	8.83	47	95	IPR000315	B-box-type zinc finger

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 114 aa Download sequence Send to blast
SAEVMGYLCE YCGERRSVVY CRSDMAGLCL SCDSKVHSAN ALSRRHSRTL ICERCASQPA 60 FVRCIDERAT LCQSCDWMEH HQGASSSPPH TREAVCWYSS CPSASELSSI WPFL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011085424.1	3e-50	zinc finger protein CONSTANS-LIKE 9
Refseq	XP_011100551.1	2e-50	zinc finger protein CONSTANS-LIKE 9
Refseq	XP_011100552.1	2e-50	zinc finger protein CONSTANS-LIKE 9
Refseq	XP_011100553.1	2e-50	zinc finger protein CONSTANS-LIKE 9
Refseq	XP_020551824.1	3e-50	zinc finger protein CONSTANS-LIKE 9
Refseq	XP_020551825.1	3e-50	zinc finger protein CONSTANS-LIKE 9
Swissprot	Q9LUA9	5e-45	COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBL	S8DAM2	4e-77	S8DAM2_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.M00064.1.p	1e-49	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1270	24	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48250.1	2e-47	B-box type zinc finger protein with CCT domain

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]