PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS59764.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

HD-ZIP

Protein Properties

Length: 161aa MW: 17699.5 Da PI: 5.861

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS59764.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59	7.9e-19	109	161	2	54
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 rk+ +++k+q Le+ F+++++++ ++++eLA++l+Lt rqV vWFqNrRa+ EPS59764.1 109 RKKLRLSKSQSALLEQSFKQHSTLNPTQKQELARELKLTPRQVEVWFQNRRAR 161 678899*********************************************98 PP
2	HD-ZIP_I/II	77.7	1.9e-25	109	161	1	53
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRAR 53 +kk+rlsk q++lLE+sF+++++L+p++K+elareL+l+prqv+vWFqnrRAR EPS59764.1 109 RKKLRLSKSQSALLEQSFKQHSTLNPTQKQELARELKLTPRQVEVWFQNRRAR 161 69**************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.27E-18	99	161	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.637	105	161	IPR001356	Homeobox domain
SMART	SM00389	8.2E-10	107	161	IPR001356	Homeobox domain
Pfam	PF00046	3.6E-16	109	161	IPR001356	Homeobox domain
CDD	cd00086	3.72E-17	109	161	No hit	No description
Gene3D	G3DSA:1.10.10.60	9.7E-18	114	161	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence Send to blast
GFDDLCNLGL GITAAAAGEG CDVSRNKPPP PLLEPSLTLS LSGENYDLFR KAVSDERRSS 60 LDVHGQDSGA ASSFSSVKRE REIGGGDEAE VERVSSRLSD EEDDGSNGRK KLRLSKSQSA 120 LLEQSFKQHS TLNPTQKQEL ARELKLTPRQ VEVWFQNRRA R

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011099420.1	3e-58	homeobox-leucine zipper protein HAT22-like
Swissprot	P46604	3e-35	HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBL	S8BZA7	1e-112	S8BZA7_9LAMI; Uncharacterized protein (Fragment)
STRING	VIT_00s0732g00010.t01	3e-49	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	2e-32	HD-ZIP family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence. Elife, 2017. [PMID:27697148] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]