PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS59982.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

NF-YC

Protein Properties

Length: 112aa MW: 12790 Da PI: 10.8582

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS59982.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	46.9	6.2e-15	3	78	23	97
NF-YC 23 larikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97 + r+kki+k d+d+++i +ea l+s + elf+ l+ rs a e+k+rt++ d+ +av+r + dfl+d p EPS59982.1 3 VGRVKKIVKLDKDISRINSEAMFLISSSTELFLQFLAERSAQVAMEKKKRTVRIGDLREAVKRHRpTADFLLDCLP 78 78*********************************************************9975489***987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	2.55E-16	2	89	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	1.7E-18	3	78	IPR009072	Histone-fold
Pfam	PF00808	3.0E-13	4	63	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 112 aa Download sequence Send to blast
ISVGRVKKIV KLDKDISRIN SEAMFLISSS TELFLQFLAE RSAQVAMEKK KRTVRIGDLR 60 EAVKRHRPTA DFLLDCLPMP PPPSDKNTHK DRSKVTAPPS FYTKSIDAFF RK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012851147.1	9e-45	PREDICTED: nuclear transcription factor Y subunit gamma
TrEMBL	S8DKF7	4e-75	S8DKF7_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.K00728.1.p	3e-44	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11435	24	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43250.1	2e-38	nuclear factor Y, subunit C13

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]