PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS60030.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

Dof

Protein Properties

Length: 225aa MW: 24961.4 Da PI: 10.1579

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS60030.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.4	1.6e-38	72	132	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +ek+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt GG++rnvPvG+g+rk+k+s EPS60030.1 72 PEKILPCPRCNSSQTKFCYYNNYNVNQPRHFCKSCQRYWTSGGTMRNVPVGAGKRKSKNSA 132 78999****************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	7.1E-32	74	130	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	2.0E-24	76	129	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.593	76	130	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	78	114	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MAPNIKLFGR RIFVPGPGES SPEGENPTPV DDGSTKSPIS ALSSESESAD KDAAEEEEKK 60 KKKKTMKKLK KPEKILPCPR CNSSQTKFCY YNNYNVNQPR HFCKSCQRYW TSGGTMRNVP 120 VGAGKRKSKN SASLLRHITI SNGNVLSFGH DSIDHRRNQT SGIPWNCPVF VPALYYNQLN 180 LAVAAPIGTF HHIDKKATTE AIEVPQVLRA NPAALSRSML FRESV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	59	70	KKKKKTMKKLKK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269\|PubMed:19619493}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009339156.1	1e-45	PREDICTED: cyclic dof factor 3-like
Swissprot	Q8LFV3	4e-42	CDF3_ARATH; Cyclic dof factor 3
TrEMBL	S8BZL6	1e-168	S8BZL6_9LAMI; Uncharacterized protein
STRING	XP_009339156.1	5e-45	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7240	22	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	5e-37	cycling DOF factor 3

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Corrales AR, et al. Multifaceted role of cycling DOF factor 3 (CDF3) in the regulation of flowering time and abiotic stress responses in Arabidopsis. Plant Cell Environ., 2017. 40(5): p. 748-764 [PMID:28044345] Renau-Morata B, et al. Ectopic Expression of CDF3 Genes in Tomato Enhances Biomass Production and Yield under Salinity Stress Conditions. Front Plant Sci, 2017. 8: p. 660 [PMID:28515731] Henriques R, et al. The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering. New Phytol., 2017. 216(3): p. 854-867 [PMID:28758689]