PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS60282.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

HB-other

Protein Properties

Length: 146aa MW: 16321 Da PI: 8.0918

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS60282.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.1	1.7e-19	34	89	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 rkRt t q+++Le+++ +++yps++++ +LA+ +gLte+q++ WF+ rR k+kk EPS60282.1 34 RKRTVKTLAQIQALEKFYIEHKYPSEAMKVHLAEAVGLTEKQISGWFCHRRLKDKK 89 9*****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.9E-20	18	89	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.28E-18	24	89	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.682	30	90	IPR001356	Homeobox domain
SMART	SM00389	5.3E-19	32	94	IPR001356	Homeobox domain
Pfam	PF00046	4.9E-17	34	89	IPR001356	Homeobox domain
CDD	cd00086	3.10E-17	34	90	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 146 aa Download sequence Send to blast
FGRNQKSSER RIMGDESGDV HPEEDDNNLL EKNRKRTVKT LAQIQALEKF YIEHKYPSEA 60 MKVHLAEAVG LTEKQISGWF CHRRLKDKKS TNAADSSNPV SRQDRSGGGA VVQDRGSGHK 120 QDSCCSTKQG DDERGSDAKE VESGRM

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011080403.1	2e-49	uncharacterized protein LOC105163662 isoform X3
TrEMBL	S8DL81	1e-104	S8DL81_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.N02368.1.p	6e-45	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3436	22	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	2e-36	HB-other family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]