PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS60306.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family C3H
Protein Properties Length: 267aa    MW: 29656.8 Da    PI: 7.0579
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS60306.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.12.3e-062751126
                --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                +k++ C+ffar G C  G+ C F+H+
  EPS60306.1 27 PKRASCKFFAR-GACLKGEHCDFSHD 51
                699********.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.00152652IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.2772653IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-72951IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.106.1E-10140205IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578503.28E-14141211No hitNo description
CDDcd001620.00162145206No hitNo description
PfamPF136395.4E-7145204IPR001841Zinc finger, RING-type
PROSITE profilePS5008912.238146204IPR001841Zinc finger, RING-type
SMARTSM001843.9E-7146203IPR001841Zinc finger, RING-type
PROSITE patternPS005180170179IPR017907Zinc finger, RING-type, conserved site
SMARTSM003561.6233261IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.31233262IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MARSAGPLIT IDAARGFPSG FSAGAMPKRA SCKFFARGAC LKGEHCDFSH DFKPLPINNI  60
CTCYEKAICD AFDEHVKVSK SASEKNLSVS PDLTIWDEGE VDVPGPTCIH DENRPPHASR  120
DDVCPVCLKR RKKRSDALRS SQEIECGVCL ERVLSKPTAS ERKFGILSEC DHPFCISCIR  180
KWRSSSPSSG IDVNSALRAC PMCRKVSYFV VPSVAWYETE EEKLEIIDSY KAKLKTIDCK  240
HFDFGNGECP FGTNCFYRHC CGDESES
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009600646.15e-89PREDICTED: E3 ubiquitin-protein ligase makorin-like isoform X2
RefseqXP_016495765.15e-89PREDICTED: E3 ubiquitin-protein ligase makorin-like isoform X2
SwissprotQ6IDS63e-80C3H35_ARATH; E3 ubiquitin-protein ligase makorin
TrEMBLS8C7C80.0S8C7C8_9LAMI; Uncharacterized protein
STRINGXP_009781754.11e-87(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33862149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-82C3H family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]